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2013/14 Intake

Mika Diamanti

  • Aman B. Saleem,ÌýE. Mika Diamanti, Julien Fournier, Kenneth D. Harris & Matteo Carandini.Coherent encoding of subjective spatial position in visual cortex and hippocampus. ±·²¹³Ù³Ü°ù±ðÌý()

Nils Gustafsson

  • Maurer, S. P., Cade, N. I., Bohner, G., Gustafsson, N., Boutant, E., & Surrey, T. (2014). EB1 Accelerates Two Conformational Transitions Important for Microtubule Maturation and Dynamics.ÌýCurrent Biology,Ìý24(4), 372-384.Ìý()
  • Bohner, G., Gustafsson, N., Cade, N. I., Maurer, S. P., Griffin, L. D., Surrey, T. (2015). Important Factors Determining the Nanoscale Tracking Precision of Dynamic Microtubule Ends. Journal of Microscopy. ()
  • Gustafsson, N., Culley, S., Ashdown, G., Owen, D. M., Pereira, P. M., & Henrioques, R. (2016). Fast Live-cell Conventional Fluorophore Nanoscopy with ImageJ Through Super-resolution Radial Fluctuations. Nature Communications, &, 12471. ()

Ross Harper

  • Ìý
  • Jason Somers, Ross E. F. Harper and Joerg T. Albert (2018)ÌýHow Many Clocks, How Many Times? On the Sensory Basis and Computational Challenges of Circadian Systems.ÌýFront. Behav. Neurosci. Ìý()
  • Harper, R. E. F.,Dayan, P., Albert, J. T., & Stanewsky, R. (2016). Sensory Conflicts Disrupts Activity of the DrosophilaÌýCircadian Network. Cell, 1711-1718. (link)

Alexander Fedorec

  • Leon, M., Woods, M. L., Fedorec, A. J. H., & Barnes, C., P. (2016). A Computational Method for the Investigation of Multistable Systems and its ApplicationÌýto Genetic Switches. BMC Systems Biology. ()

Marc Williams

  • Marc J. Williams, Benjamin Werner, Timon Heide, Christina Curtis, Chris P. Barnes, Andrea Sottoriva & Trevor A. Graham. (2018)ÌýQuantification of subclonal selection in cancer from bulk sequencing data. Nature Genetics.Ìý()
  • Williams, M. J., Werner, B., Barnes, C. P., Graham, T. A., & Sottoriva, A. (2016). Identification of Neutral Tumor Evolution Across Cancer Types. Nature,Ìý238-244. ()

Liam Shaw

  • R. Wang†, L. van Dorp†, L. Shaw†, P. Bradley, Q. Wang, X. Wang, L. Jin, Q. Zhang, Y. Liu, A. Rieux, T. Dorai-Schneiders, L. Weinert, Z. Iqbal, X. Didelot, H. Wang, F. Balloux (2018)ÌýThe global distribution and spread of the mobilized colistin resistance gene mcr-1,ÌýNature Communications.Ìý()
  • U. Harjunmaa, R. Doyle, J. Järnstedt, S. Kamiz, J.M. Jorgensen, C.P. Stewart,ÌýL. Shaw, L. Hallamaa, U.ÌýAshorn, N. Klein, K.G. Dewey, K. Maleta, P. Ashorn (2018) Periapical infection may affect birth outcomes via systemic inflammation. Oral Diseases,ÌýOral Diseases.Ìý()
  • F. Lassalle, M. Spagnoletti, M. Fumagalli, L. Shaw, M. Dyble, C. Walker, M.G. Thomas, A. Bamberg Migliano, F. Balloux (2017)Oral microbiomes from hunter-gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet, Molecular Ecology.Ìý()
  • L. Shaw, C. Barnes, N. Klein, A. Sarah Walker, F. BallouxÌýÌý(2017)ÌýA perturbation model of the gut microbiome's response to antibiotics,ÌýBioRxiv.Ìý()
  • L. Shaw, A. Smith, A. RobertsÌýÌý(2017) The oral microbiome, Emerging Topics in Life Sciences. ()
  • D. Jeffares, C. Jolly, M. Hoti, D. Speed, C. Rallis, L. Shaw, F. Balloux, C. Dessimoz, J. Bahler, F. Sedlazeck (2017) The human salivary microbiome is shaped by shared environment rather than genetics: evidence from a large family of closely related individuals, mBio 8:5. (Link)
  • Shaw, L., Harjunmaa, Ulla., Doyle, R., Mulewa, S., Charlie, D., Mleta, K., Callard, R., Walker, A. S., Balloux, F., Ashorn, P., & Klein, N. (2016). Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: A Cross-sectional Cohort Study in Malawi. Applied and Environmental Microbiology: American Society for Microbiology. ()
  • Jeffares, D. C., Jolly, C., Hoti, M., Speed, D., Shaw, L., Rallis, C., Balloux, F., Dessimoz, C., Bähler, J., & Sedlazeck, F., J. (2016). Transient Structural Variations have Strong Effects on Quantitative Traits and Reproductive Isolation in Fission Yeast. Nature, 8 (14061). ()

Christopher Ruis

  • Christopher Ruis , Sunando Roy, Julianne R. Brown, David J. Allen, Richard A. Goldstein, Judith Breuer (2017)ÌýThe emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission, Plos One.Ìý()
  • Brown, J. R., Roy, S., Ruis, C., Romero, E. Y., Shah, D., Williams, R., & Breuer, J. (2016) Norovirus whole-genome sequencing by SureSelect target enrichment: a robust and sensitive method. Journal of Clinical Microbiology, 54/10 2530-2537. ()
  • Morfopoulou, S., Mee, E. T., Connaughton, S. M., Brown, J. R., Gilmour, K., Chong, W. K., Duprex, W. P., Ferguson, D., Hubank, M., Hutchinson, C., Kaliakatsos, M., McQuaid, S., Paine, S., Plagnol, V., Ruis, C., Virasami, A., Zhan, H., Jacques, T. S., Schepelmann, S., Qasim, W., & Breuer, J. (2016) Depp sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis. Acta Neuropathologica.Ìý()

Talfan Evans

  • Daniel Fine English,Ìý ÌýSam McKenzie, Talfan Evans, Kanghwan Kim, EuisikYoon, GyörgyBuzsák (2017)ÌýPyramidal Cell-Interneuron Circuit Architecture and Dynamics in Hippocampal Networks. Neuron, Volume 96, Issue 2.Ìý()
  • Evans, T., Bicanski, A., Bush, D., & Burgess, N. (2016) How Environment and Self-motion Combine in Neural Representations of Space. National Centre for Biotechnology Information. ()

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Hollie-Ann Hatherell

  • Hatherell, H., Colijn, C., Stagg, H. R., Jackson, C., Winter, J. R., & Abubakar, I. (2016)Interpreting Whole Genome Sequencing for Investigating Tuberculosis Transmission: A Systematic Review. National Centre for Biotechnology Information. ()
  • Hatherell, H., Didelot, X., Pollock, S. L., Tang, P., Crisan, A., Johnston, J. C., Colijn, C., & Gardy, J. L. (2016) Declaring a Tuberculosis Outbreak Over with Genomic Epidemiology. ()
  • Stagg, H. R., Hatherell, H., Lipman, M. C., Harris, R. J, & Abubakar, I. (2016) Treatment Regimens for Rifampicin-resistant Tuberculosis: Highlighting a Research Gap. Ingenta Connect. ()

Peter Zatka-Haas

  • Burgess, C. P., Stenmetz, N., Lak, A., Zatka-Haas, P., Ranson, A., Wells, M., Schroeder, S., Jacobs, E. A. K., Reddy, C. B., Soares, S., Linden, J. F., Paton, J. J., Harris, K. D., & Carandini, M. (2061) High-yield Methods for Accurate Two-alternative Visual Psychophysics in Head-fixed Mice. Biorxiv. ()

Daniel Temko

  • Daniel P Temko, Yu-Kang Cheng, Kornelia Polyak and Franziska Michor (2017)ÌýMathematical modeling links pregnancy-associated changes and breast cancer risk.ÌýCancer Research.Ìý()